Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1623
ChIP-seq
1363
total RNA-seq
433
ATAC-seq
191
single cell RNA-seq
87
RNA microarray
54
pCHi-C
36
snATAC-seq
28
Hi-C
20
WGBS
19
RRBS
17
small RNA-seq
10
MeRIP-seq
6
DNase-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
11
DNA accessibility
Date released
4
August, 2017
4
October, 2019
2
July, 2019
1
November, 2018
Available data
184
bam
184
bed narrowPeak
184
bigBed narrowPeak
184
bigWig
bed broadPeak
176
bigBed broadPeak
174
bed bed3+
14
fastq
1
tar
Organism
11
Homo sapiens
Biosample type
6
tissue
4
primary cell
1
cell line
Organ
4
epithelium
4
kidney
3
pancreas
1
blood vessel
1
brain
1
liver
1
vasculature
1
vein
Project
11
AMP
Genome assembly (visualization)
8
hg19
2
GRCh38
Lab
11
AMP-T2D consortium
award.project!
HPAP
files.file_type!
bed broadPeak
organ_slims!
heart
BIOSAMPLE
ASSAY
11 results
search-icon
table-tab-icon
Clear Filters
DNase-seq
FAIRE-seq
tissue
islet of Langerhans
1
1
frontal cortex
1
kidney
1
pancreas
1
right lobe of liver
1
primary cell
endothelial cell of umbilical vein
1
kidney glomerular epithelial cell
1
kidney tubule cell
1
skeletal muscle myoblast
1
cell line
glomerular visceral epithelial cell
1
Download