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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1290
total RNA-seq
1014
ChIP-seq
467
ATAC-seq
235
single cell RNA-seq
200
DNase-seq
87
RNA microarray
58
WGBS
57
snATAC-seq
56
pCHi-C
32
Hi-C
18
small RNA-seq
17
RRBS
10
MeRIP-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
FAIRE-seq
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
203
DNA accessibility
Date released
187
June, 2019
11
October, 2019
2
August, 2017
2
July, 2019
1
November, 2020
Available data
214
bam
214
bed narrowPeak
214
bigBed narrowPeak
214
bigWig
206
bed broadPeak
206
bigBed broadPeak
204
bed bed3+
fastq
1
tar
Organism
203
Homo sapiens
Biosample type
170
tissue
31
primary cell
2
cell line
Organ
82
kidney
36
limb
33
musculature of body
31
brain
30
heart
20
epithelium
18
ureter
12
vasculature
10
blood vessel
7
connective tissue
5
pancreas
4
artery
4
eye
3
liver
3
vein
2
nerve
1
adipose tissue
Project
203
AMP
Genome assembly (visualization)
196
GRCh38
177
hg19
Lab
203
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
files.file_type!
fastq
month_released!
January, 2019
March, 2019
BIOSAMPLE
ASSAY
203 results
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Clear Filters
DNase-seq
FAIRE-seq
tissue
heart
18
muscle of arm
17
kidney
13
1
muscle of leg
13
brain
12
+ See 37 more…
primary cell
cardiac fibroblast
3
endothelial cell of umbilical vein
2
1
kidney tubule cell
3
glomerular visceral epithelial cell
2
kidney glomerular epithelial cell
2
+ See 18 more…
cell line
Panc1
1
glomerular visceral epithelial cell
1
See all biosamples
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