Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
75
ATAC-seq
64
single cell RNA-seq
60
total RNA-seq
28
ChIP-seq
6
snATAC-seq
4
RRBS
3
snDrop-seq
2
DNase-seq
2
RNA microarray
2
STARR-seq
2
pCHi-C
1
Hi-C
1
small RNA-seq
0
HiChIP
Assay category
2
DNA accessibility
1
3D chromatin structure
Date released
2
October, 2019
1
August, 2021
Available data
79
bam
79
bed narrowPeak
bigBed narrowPeak
79
bigWig
78
bed bed3+
78
bed broadPeak
78
bigBed broadPeak
1
hic
Organism
3
Homo sapiens
Biosample type
2
primary cell
1
tissue
Organ
10
epithelium
9
pancreas
6
musculature of body
5
blood vessel
5
liver
5
vasculature
4
limb
3
brain
3
heart
3
kidney
2
vein
1
connective tissue
Project
3
AMP
Genome assembly (visualization)
1
hg19
Lab
2
AMP-T2D consortium
1
Katalin Susztak, Upenn
files.file_type!
bigBed narrowPeak
BIOSAMPLE
ASSAY
3 results
search-icon
table-tab-icon
Clear Filters
DNase-seq
Hi-C
primary cell
kidney glomerular epithelial cell
1
kidney tubule cell
1
tissue
kidney
1
Download