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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
129
ATAC-seq
92
ChIP-seq
31
DNase-seq
29
total RNA-seq
28
single cell RNA-seq
10
RRBS
6
Hi-C
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
1
pCHi-C
Assay category
31
DNA accessibility
6
3D chromatin structure
Date released
24
June, 2019
5
October, 2019
4
July, 2019
2
August, 2017
1
March, 2020
1
November, 2020
Available data
33
bigWig
31
bed bed3+
29
bam
29
bed narrowPeak
29
bigBed narrowPeak
28
bed broadPeak
28
bigBed broadPeak
4
hdf5
2
hic
1
bedpe bed3+
1
fastq
Organism
37
Homo sapiens
Biosample type
182
tissue
37
primary cell
5
in vitro differentiated cells
2
cell line
Organ
22
epithelium
12
kidney
10
vasculature
8
blood vessel
8
brain
7
connective tissue
4
vein
3
heart
3
liver
1
eye
1
musculature of body
Project
37
AMP
Genome assembly (visualization)
28
hg19
27
GRCh38
Lab
37
AMP-T2D consortium
1
ITG
Audit category:
3
inconsistent ontology term
1
audit script error
organ_slims!
pancreas
BIOSAMPLE
ASSAY
37 results
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DNase-seq
Hi-C
primary cell
endothelial cell of umbilical vein
2
2
cardiac fibroblast
3
kidney tubule cell
3
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
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