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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1676
ChIP-seq
1389
total RNA-seq
420
ATAC-seq
299
single cell RNA-seq
157
DNase-seq
86
RNA microarray
84
snATAC-seq
57
pCHi-C
27
WGBS
22
Hi-C
18
small RNA-seq
15
RRBS
5
GRO-seq
5
STARR-seq
4
FAIRE-seq
4
MeRIP-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
157
DNA accessibility
Date released
141
June, 2019
9
November, 2018
5
August, 2017
2
February, 2023
1
November, 2020
1
October, 2019
Available data
156
bam
156
bed narrowPeak
156
bigBed narrowPeak
156
bigWig
154
bed broadPeak
154
bigBed broadPeak
152
bed bed3+
12
fastq
Organism
159
Homo sapiens
Biosample type
142
tissue
13
primary cell
3
cell line
1
in vitro differentiated cells
Organ
81
kidney
limb
33
musculature of body
32
brain
30
heart
epithelium
18
ureter
11
vasculature
9
blood vessel
9
connective tissue
8
pancreas
6
liver
4
artery
4
eye
2
adipose tissue
2
nerve
2
vein
1
spleen
Project
157
AMP
2
T1D
Genome assembly (visualization)
154
GRCh38
139
hg19
Lab
157
AMP-T2D consortium
2
Kyle Gaulton, UCSD
Audit category:
2
inconsistent ontology term
assay_title!
Capture-C
organ_slims!
epithelium
limb
BIOSAMPLE
ASSAY
159 results
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DNase-seq
HiChIP
tissue
heart
18
brain
14
kidney
13
renal cortex interstitium
11
renal pelvis
10
+ See 34 more…
primary cell
cardiac fibroblast
3
skeletal muscle myoblast
2
astrocyte of the cerebellum
1
astrocyte of the hippocampus
1
brain pericyte
1
+ See 5 more…
cell line
EndoC_BH1
2
Panc1
1
in vitro differentiated cells
adipocyte
1
See all biosamples
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