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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
355
ATAC-seq
271
ChIP-seq
262
single cell RNA-seq
243
total RNA-seq
87
RNA microarray
83
snATAC-seq
57
WGBS
55
pCHi-C
28
Hi-C
16
RRBS
10
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
DNase-seq
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
3
DNA accessibility
Date released
2
February, 2023
2
October, 2019
1
August, 2017
Available data
bam
176
bed narrowPeak
176
bigBed narrowPeak
176
bigWig
173
bed broadPeak
173
bigBed broadPeak
171
bed bed3+
12
fastq
Organism
5
Homo sapiens
Biosample type
2
cell line
2
primary cell
1
tissue
Organ
2
epithelium
2
kidney
1
liver
Project
3
AMP
2
T1D
Lab
3
AMP-T2D consortium
2
Kyle Gaulton, UCSD
assay_title!
shRNA RNA-seq
files.file_type!
bam
organ_slims!
musculature of body
BIOSAMPLE
ASSAY
5 results
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DNase-seq
HiChIP
cell line
EndoC_BH1
2
primary cell
kidney glomerular epithelial cell
1
kidney tubule cell
1
tissue
right lobe of liver
1
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