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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
957
ChIP-seq
399
ATAC-seq
231
single cell RNA-seq
181
DNase-seq
86
RNA microarray
57
snATAC-seq
56
pCHi-C
25
Hi-C
18
small RNA-seq
17
WGBS
11
RRBS
5
STARR-seq
4
MeRIP-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
Capture-C
2
FAIRE-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
181
DNA accessibility
17
DNA methylation
Target of assay
2
control
2
nucleotide modification
Date released
173
June, 2019
12
July, 2019
7
August, 2017
5
November, 2020
5
October, 2019
Available data
210
bam
209
bigWig
192
bed narrowPeak
192
bigBed narrowPeak
190
bed broadPeak
190
bigBed broadPeak
188
bed bed3+
fastq
17
bed bedMethyl
17
bigBed bedMethyl
Organism
202
Homo sapiens
Biosample type
189
tissue
12
primary cell
1
cell line
Organ
81
kidney
epithelium
56
pancreas
38
heart
37
limb
34
musculature of body
30
brain
18
ureter
13
vasculature
11
blood vessel
10
connective tissue
6
liver
4
adipose tissue
4
artery
4
eye
2
nerve
2
vein
Project
202
AMP
Genome assembly (visualization)
187
GRCh38
163
hg19
Lab
198
AMP-T2D consortium
4
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
3
inconsistent ontology term
assay_title!
total RNA-seq
files.file_type!
fastq
organ_slims!
epithelium
BIOSAMPLE
ASSAY
202 results
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Clear Filters
DNase-seq
WGBS
MeRIP-seq
tissue
heart
18
1
muscle of arm
17
muscle of leg
13
1
kidney
13
brain
12
+ See 42 more…
primary cell
cardiac fibroblast
3
astrocyte of the cerebellum
1
astrocyte of the hippocampus
1
brain pericyte
1
cardiac muscle cell
1
+ See 5 more…
cell line
Panc1
1
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