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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
344
total RNA-seq
218
ChIP-seq
103
ATAC-seq
80
single cell RNA-seq
11
snATAC-seq
8
DNase-seq
6
Hi-C
4
WGBS
2
Capture-C
2
FAIRE-seq
2
RRBS
2
small RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
pCHi-C
0
MeRIP-seq
Assay category
8
DNA accessibility
4
DNA methylation
Date released
6
November, 2018
4
June, 2019
1
August, 2017
1
October, 2019
Available data
12
bam
12
bigWig
8
bed narrowPeak
8
bigBed narrowPeak
7
bed bed3+
7
bed broadPeak
7
bigBed broadPeak
7
fastq
4
bed bedMethyl
4
bigBed bedMethyl
Organism
12
Homo sapiens
Biosample type
11
tissue
1
cell line
Organ
81
kidney
38
heart
37
limb
34
musculature of body
32
brain
19
epithelium
18
ureter
15
connective tissue
13
vasculature
12
pancreas
11
blood vessel
11
liver
8
adipose tissue
4
artery
4
eye
3
spleen
2
nerve
2
vein
Project
HPAP
12
AMP
Genome assembly (visualization)
12
GRCh38
6
hg19
Lab
12
AMP-T2D consortium
Rohit N. Kulkarni, M.D., Ph.D.
award.project!
HPAP
lab.title!
Rohit N. Kulkarni, M.D., Ph.D.
BIOSAMPLE
ASSAY
12 results
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DNase-seq
WGBS
tissue
body of pancreas
4
2
pancreas
2
2
islet of Langerhans
1
cell line
Panc1
1
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