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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1527
total RNA-seq
546
ChIP-seq
369
single cell RNA-seq
253
ATAC-seq
87
RNA microarray
84
snATAC-seq
75
WGBS
57
pCHi-C
34
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
DNase-seq
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
3
DNA accessibility
1
Transcription
Target of assay
5
control
5
nucleotide modification
Date released
10
November, 2020
2
October, 2019
1
August, 2017
1
March, 2023
Available data
209
bam
bed narrowPeak
209
bigBed narrowPeak
209
bigWig
206
bed broadPeak
206
bigBed broadPeak
204
bed bed3+
12
fastq
Organism
13
Homo sapiens
Biosample type
7
cell line
5
tissue
2
primary cell
Organ
10
pancreas
8
epithelium
2
kidney
1
liver
Project
13
AMP
1
community
Lab
10
Rohit N. Kulkarni, M.D., Ph.D.
3
AMP-T2D consortium
1
Anna Gloyn, Oxford
Audit category:
6
inconsistent ontology term
files.file_type!
bed narrowPeak
BIOSAMPLE
ASSAY
14 results
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MeRIP-seq
DNase-seq
shRNA RNA-seq
cell line
EndoC_BH1
6
EndoC-BH1
1
tissue
islet of Langerhans
4
right lobe of liver
1
primary cell
kidney glomerular epithelial cell
1
kidney tubule cell
1
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