Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
552
ChIP-seq
206
ATAC-seq
189
total RNA-seq
154
single cell RNA-seq
84
RNA microarray
77
snATAC-seq
75
WGBS
53
pCHi-C
26
DNase-seq
10
MeRIP-seq
6
Hi-C
5
GRO-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
2
RRBS
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
26
DNA accessibility
Target of assay
5
control
5
nucleotide modification
Date released
23
June, 2019
10
November, 2020
2
October, 2019
1
August, 2017
Available data
23
bam
23
bed bed3+
23
bed broadPeak
23
bed narrowPeak
23
bigBed broadPeak
23
bigBed narrowPeak
23
bigWig
Organism
36
Homo sapiens
Biosample type
21
tissue
9
primary cell
6
cell line
Organ
14
epithelium
12
pancreas
10
brain
9
kidney
3
heart
1
blood vessel
1
connective tissue
1
liver
1
vasculature
Project
36
AMP
Genome assembly (visualization)
207
GRCh38
hg19
Lab
26
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
6
inconsistent ontology term
assembly!
hg19
month_released!
August, 2021
December, 2019
BIOSAMPLE
ASSAY
36 results
search-icon
table-tab-icon
Clear Filters
DNase-seq
MeRIP-seq
tissue
islet of Langerhans
4
body of pancreas
2
heart
2
Ammon's horn
1
caudate nucleus
1
+ See 11 more…
primary cell
kidney tubule cell
3
glomerular visceral epithelial cell
2
kidney glomerular epithelial cell
2
cardiac fibroblast
1
kidney capillary endothelial cell
1
cell line
EndoC_BH1
6
See all biosamples
Download