Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1683
ChIP-seq
1525
total RNA-seq
529
ATAC-seq
369
single cell RNA-seq
87
RNA microarray
84
snATAC-seq
75
WGBS
57
pCHi-C
34
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
6
DNase-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
6
DNA accessibility
Target of assay
5
control
5
nucleotide modification
Date released
10
November, 2020
3
August, 2017
3
October, 2019
Available data
209
bam
209
bed narrowPeak
209
bigBed narrowPeak
209
bigWig
bed broadPeak
206
bigBed broadPeak
204
bed bed3+
12
fastq
Organism
16
Homo sapiens
Biosample type
7
cell line
6
tissue
3
primary cell
Organ
11
pancreas
9
epithelium
3
kidney
1
liver
Project
16
AMP
Genome assembly (visualization)
3
hg19
2
GRCh38
Lab
10
Rohit N. Kulkarni, M.D., Ph.D.
6
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
files.file_type!
bed broadPeak
month_released!
October, 2018
BIOSAMPLE
ASSAY
16 results
search-icon
table-tab-icon
Clear Filters
MeRIP-seq
DNase-seq
cell line
EndoC_BH1
6
glomerular visceral epithelial cell
1
tissue
islet of Langerhans
4
1
right lobe of liver
1
primary cell
kidney glomerular epithelial cell
1
kidney tubule cell
1
skeletal muscle myoblast
1
Download