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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1527
total RNA-seq
1070
ChIP-seq
504
ATAC-seq
369
single cell RNA-seq
87
RNA microarray
84
snATAC-seq
75
WGBS
57
pCHi-C
34
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
DNase-seq
3
snDrop-seq
2
HiChIP
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
3
DNA accessibility
1
Transcription
Date released
84
February, 2021
2
December, 2019
2
October, 2019
1
August, 2017
1
August, 2021
1
March, 2023
Available data
209
bam
209
bed narrowPeak
bigBed narrowPeak
209
bigWig
206
bed broadPeak
206
bigBed broadPeak
204
bed bed3+
84
txt
12
fastq
2
tsv
Organism
89
Homo sapiens
Biosample type
88
tissue
2
primary cell
1
cell line
Organ
84
bone element
4
kidney
3
epithelium
1
adipose tissue
1
connective tissue
1
liver
Project
90
AMP
1
community
Lab
90
AMP-T2D consortium
1
Anna Gloyn, Oxford
Audit category:
84
inconsistent ontology term
2
audit script error
assay_title!
CRISPR RNA-seq
files.file_type!
bigBed narrowPeak
BIOSAMPLE
ASSAY
91 results
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Clear Filters
RNA microarray
DNase-seq
siRNA RNA-seq
tissue
bone element
84
kidney interstitium
1
renal glomerulus
1
right lobe of liver
1
subcutaneous adipose tissue
1
primary cell
kidney glomerular epithelial cell
1
kidney tubule cell
1
cell line
EndoC-BH1
1
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