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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1516
ChIP-seq
1308
total RNA-seq
477
ATAC-seq
360
single cell RNA-seq
203
DNase-seq
84
snATAC-seq
66
WGBS
48
pCHi-C
29
Hi-C
18
small RNA-seq
13
RRBS
5
GRO-seq
4
FAIRE-seq
4
MeRIP-seq
4
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
RNA microarray
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
203
DNA accessibility
Date released
183
June, 2019
10
October, 2019
9
November, 2018
August, 2017
2
December, 2019
1
August, 2021
1
November, 2020
Available data
201
bam
201
bed narrowPeak
201
bigBed narrowPeak
201
bigWig
200
bed bed3+
200
bed broadPeak
200
bigBed broadPeak
9
fastq
2
tsv
Organism
205
Homo sapiens
Biosample type
178
tissue
26
primary cell
2
cell line
Organ
82
kidney
35
limb
32
brain
32
musculature of body
29
heart
19
epithelium
18
ureter
10
vasculature
9
blood vessel
8
connective tissue
7
pancreas
5
liver
4
artery
4
eye
3
adipose tissue
2
nerve
2
vein
1
spleen
Project
206
AMP
Genome assembly (visualization)
201
GRCh38
178
hg19
Lab
206
AMP-T2D consortium
Audit category:
inconsistent ontology term
2
audit script error
audit.ERROR.category!
inconsistent ontology term
month_released!
August, 2017
August, 2020
BIOSAMPLE
ASSAY
206 results
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DNase-seq
RNA microarray
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
12
+ See 42 more…
primary cell
kidney tubule cell
3
cardiac fibroblast
2
endothelial cell of umbilical vein
2
glomerular visceral epithelial cell
2
kidney glomerular epithelial cell
2
+ See 15 more…
cell line
Panc1
1
glomerular visceral epithelial cell
1
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