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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1785
ChIP-seq
1467
total RNA-seq
449
ATAC-seq
305
single cell RNA-seq
131
DNase-seq
85
RNA microarray
78
snATAC-seq
75
WGBS
55
pCHi-C
32
Hi-C
17
RRBS
17
small RNA-seq
10
MeRIP-seq
5
GRO-seq
4
Capture-C
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
STARR-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
131
DNA accessibility
Date released
109
June, 2019
84
February, 2021
9
November, 2018
7
October, 2019
5
August, 2017
1
August, 2021
1
November, 2020
Available data
130
bam
130
bed narrowPeak
130
bigBed narrowPeak
130
bigWig
128
bed broadPeak
128
bigBed broadPeak
126
bed bed3+
84
txt
12
fastq
Organism
215
Homo sapiens
Biosample type
195
tissue
19
primary cell
1
cell line
1
in vitro differentiated cells
Organ
84
bone element
kidney
36
limb
33
musculature of body
32
brain
30
heart
20
epithelium
18
ureter
11
vasculature
10
connective tissue
9
blood vessel
8
pancreas
6
liver
4
artery
4
eye
3
adipose tissue
2
nerve
2
vein
1
spleen
Project
216
AMP
Genome assembly (visualization)
128
GRCh38
114
hg19
Lab
216
AMP-T2D consortium
Audit category:
87
inconsistent ontology term
month_released!
August, 2020
December, 2018
organ_slims!
kidney
BIOSAMPLE
ASSAY
216 results
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Clear Filters
DNase-seq
RNA microarray
tissue
bone element
84
heart
18
muscle of arm
17
brain
14
muscle of leg
13
+ See 33 more…
primary cell
cardiac fibroblast
3
endothelial cell of umbilical vein
2
skeletal muscle myoblast
2
astrocyte of the cerebellum
1
astrocyte of the hippocampus
1
+ See 10 more…
cell line
Panc1
1
in vitro differentiated cells
adipocyte
1
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