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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1742
ChIP-seq
1396
total RNA-seq
ATAC-seq
299
single cell RNA-seq
193
DNase-seq
86
RNA microarray
84
snATAC-seq
57
pCHi-C
28
WGBS
26
Hi-C
18
small RNA-seq
15
RRBS
5
GRO-seq
5
STARR-seq
4
FAIRE-seq
4
MeRIP-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
Capture-C
2
HiChIP
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
193
DNA accessibility
15
DNA methylation
Date released
173
June, 2019
11
August, 2017
9
July, 2019
9
November, 2018
5
October, 2019
1
November, 2020
Available data
192
bam
192
bed narrowPeak
192
bigBed narrowPeak
192
bigWig
190
bed broadPeak
190
bigBed broadPeak
188
bed bed3+
16
fastq
13
bed bedMethyl
13
bigBed bedMethyl
Organism
208
Homo sapiens
Biosample type
189
tissue
17
primary cell
1
cell line
1
in vitro differentiated cells
Organ
85
kidney
38
musculature of body
36
limb
34
brain
32
heart
epithelium
18
ureter
12
vasculature
10
connective tissue
10
pancreas
9
blood vessel
8
liver
5
eye
4
artery
2
adipose tissue
2
nerve
2
vein
1
pericardium
1
spleen
Project
208
AMP
Genome assembly (visualization)
190
GRCh38
188
hg19
Lab
208
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
assay_title!
ATAC-seq
CRISPR RNA-seq
organ_slims!
epithelium
BIOSAMPLE
ASSAY
208 results
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Clear Filters
DNase-seq
RRBS
tissue
heart
18
muscle of arm
17
brain
14
1
kidney
13
1
muscle of leg
13
+ See 42 more…
primary cell
cardiac fibroblast
3
1
skeletal muscle myoblast
2
1
cardiac muscle cell
1
1
skeletal muscle cell
1
1
astrocyte of the cerebellum
1
+ See 5 more…
cell line
Panc1
1
in vitro differentiated cells
adipocyte
1
See all biosamples
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