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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1588
ChIP-seq
1271
total RNA-seq
320
ATAC-seq
single cell RNA-seq
181
DNase-seq
87
RNA microarray
39
pCHi-C
28
WGBS
24
Hi-C
18
snATAC-seq
16
small RNA-seq
11
RRBS
10
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
4
FAIRE-seq
3
snDrop-seq
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
181
DNA accessibility
11
DNA methylation
Date released
163
June, 2019
9
November, 2018
8
August, 2017
6
July, 2019
6
October, 2019
Available data
180
bam
180
bed narrowPeak
180
bigBed narrowPeak
180
bigWig
178
bed broadPeak
178
bigBed broadPeak
177
bed bed3+
14
fastq
9
bed bedMethyl
9
bigBed bedMethyl
Organism
192
Homo sapiens
Biosample type
189
tissue
primary cell
2
cell line
1
in vitro differentiated cells
Organ
70
kidney
36
limb
36
musculature of body
28
brain
28
heart
18
ureter
10
pancreas
5
blood vessel
5
liver
5
vasculature
4
artery
3
connective tissue
3
eye
2
adipose tissue
2
nerve
1
epithelium
1
pericardium
1
spleen
Project
192
AMP
Genome assembly (visualization)
180
GRCh38
173
hg19
Lab
192
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assay_title!
single cell RNA-seq
award.project!
T1D
biosample_type!
primary cell
BIOSAMPLE
ASSAY
192 results
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DNase-seq
RRBS
tissue
heart
18
muscle of arm
17
brain
14
1
kidney
13
1
muscle of leg
13
+ See 42 more…
cell line
Panc1
1
glomerular visceral epithelial cell
1
in vitro differentiated cells
adipocyte
1
See all biosamples
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