Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
160
ATAC-seq
115
total RNA-seq
108
ChIP-seq
89
single cell RNA-seq
snATAC-seq
47
WGBS
31
pCHi-C
18
Hi-C
10
RRBS
6
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
2
DNase-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
10
DNA methylation
2
DNA accessibility
Date released
9
July, 2019
2
October, 2019
1
August, 2017
Available data
bam
32
bed narrowPeak
32
bigBed narrowPeak
32
bigWig
30
bed broadPeak
30
bigBed broadPeak
28
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
3
fastq
Organism
12
Homo sapiens
Biosample type
12
primary cell
tissue
Organ
8
epithelium
5
kidney
1
brain
1
connective tissue
1
eye
1
heart
1
liver
1
musculature of body
1
vasculature
Project
12
AMP
Genome assembly (visualization)
10
hg19
Lab
12
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
assay_title!
snATAC-seq
biosample_type!
tissue
files.file_type!
bam
BIOSAMPLE
ASSAY
12 results
search-icon
table-tab-icon
Clear Filters
RRBS
DNase-seq
primary cell
cardiac fibroblast
1
cardiac muscle cell
1
choroid plexus epithelial cell
1
epithelial cell of proximal tubule
1
hepatocyte
1
+ See 7 more…
See all biosamples
Download