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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1629
ChIP-seq
1497
total RNA-seq
509
ATAC-seq
369
single cell RNA-seq
202
DNase-seq
87
RNA microarray
84
snATAC-seq
75
WGBS
53
pCHi-C
29
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
whole genome sequencing assay
Assay category
202
DNA accessibility
96
DNA methylation
Date released
187
June, 2019
41
May, 2022
27
July, 2019
20
August, 2017
16
November, 2018
October, 2019
6
February, 2021
1
November, 2020
Available data
219
bam
218
bigWig
201
bed narrowPeak
201
bigBed narrowPeak
199
bed broadPeak
199
bigBed broadPeak
197
bed bed3+
41
zippedFastqFolder
36
bed bedMethyl
36
bigBed bedMethyl
33
fastq
6
tsv
Organism
298
Homo sapiens
Biosample type
212
tissue
84
primary cell
1
cell line
1
in vitro differentiated cells
Organ
82
kidney
67
epithelium
60
pancreas
40
heart
39
musculature of body
34
brain
33
limb
18
ureter
16
connective tissue
13
liver
10
vasculature
8
adipose tissue
7
blood vessel
5
eye
3
spleen
2
artery
1
pericardium
Project
251
AMP
47
HPAP
Genome assembly (visualization)
216
GRCh38
197
hg19
Lab
251
AMP-T2D consortium
47
Klaus Kaestner, Upenn
Audit category:
6
inconsistent ontology term
assay_title!
whole genome sequencing assay
month_released!
October, 2019
BIOSAMPLE
ASSAY
298 results
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DNase-seq
WGBS
RRBS
tissue
heart
18
1
muscle of arm
17
brain
14
1
kidney
13
1
muscle of leg
13
1
+ See 44 more…
primary cell
pancreatic alpha cell
31
pancreatic beta cell
16
cardiac fibroblast
3
1
skeletal muscle myoblast
2
1
cardiac muscle cell
1
1
+ See 19 more…
cell line
HepG2
1
in vitro differentiated cells
adipocyte
1
See all biosamples
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