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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
340
ATAC-seq
263
single cell RNA-seq
232
total RNA-seq
223
ChIP-seq
87
RNA microarray
66
snATAC-seq
57
WGBS
39
pCHi-C
34
Hi-C
21
RRBS
10
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
DNase-seq
3
snDrop-seq
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
21
DNA methylation
3
DNA accessibility
Date released
15
July, 2019
7
August, 2017
2
October, 2019
Available data
bam
209
bed narrowPeak
209
bigBed narrowPeak
209
bigWig
206
bed broadPeak
206
bigBed broadPeak
204
bed bed3+
19
bed bedMethyl
19
bigBed bedMethyl
16
fastq
Organism
24
Homo sapiens
Biosample type
12
primary cell
12
tissue
Organ
8
epithelium
6
kidney
5
musculature of body
3
liver
2
brain
2
heart
2
pancreas
1
connective tissue
1
eye
1
pericardium
1
vasculature
Project
24
AMP
Genome assembly (visualization)
19
hg19
Lab
24
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
files.file_type!
bam
lab.title!
Kyle Gaulton, UCSD
BIOSAMPLE
ASSAY
24 results
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RRBS
DNase-seq
primary cell
cardiac fibroblast
1
cardiac muscle cell
1
choroid plexus epithelial cell
1
epithelial cell of proximal tubule
1
hepatocyte
1
+ See 7 more…
tissue
skeletal muscle tissue
4
brain
1
heart left ventricle
1
islet of Langerhans
1
kidney
1
+ See 4 more…
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