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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1558
ChIP-seq
1432
total RNA-seq
525
ATAC-seq
368
single cell RNA-seq
156
DNase-seq
87
RNA microarray
83
snATAC-seq
65
WGBS
56
pCHi-C
28
Hi-C
16
small RNA-seq
14
RRBS
10
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
156
DNA accessibility
14
DNA methylation
Date released
136
June, 2019
14
July, 2019
10
October, 2019
9
November, 2018
August, 2017
1
November, 2020
Available data
154
bam
154
bed narrowPeak
154
bigBed narrowPeak
154
bigWig
153
bed bed3+
153
bed broadPeak
153
bigBed broadPeak
14
bed bedMethyl
14
bigBed bedMethyl
9
fastq
Organism
170
Homo sapiens
Biosample type
132
tissue
36
primary cell
2
cell line
Organ
85
kidney
36
limb
34
brain
musculature of body
32
heart
25
epithelium
ureter
12
vasculature
9
blood vessel
9
connective tissue
9
pancreas
6
liver
5
eye
4
artery
2
adipose tissue
2
nerve
2
vein
1
pericardium
1
spleen
Project
170
AMP
Genome assembly (visualization)
154
GRCh38
145
hg19
Lab
170
AMP-T2D consortium
Audit category:
5
inconsistent ontology term
month_released!
August, 2017
organ_slims!
musculature of body
ureter
BIOSAMPLE
ASSAY
170 results
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DNase-seq
RRBS
tissue
heart
18
brain
14
1
kidney
13
1
renal cortex interstitium
11
right kidney
10
+ See 34 more…
primary cell
cardiac fibroblast
3
1
kidney tubule cell
3
cardiac muscle cell
1
1
choroid plexus epithelial cell
1
1
endothelial cell of umbilical vein
2
+ See 16 more…
cell line
Panc1
1
glomerular visceral epithelial cell
1
See all biosamples
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