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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
393
ChIP-seq
113
total RNA-seq
29
ATAC-seq
6
MeRIP-seq
6
pCHi-C
5
STARR-seq
4
Hi-C
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
DNase-seq
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
MPRA
1
WGBS
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
2
DNA accessibility
1
DNA methylation
Date released
2
October, 2019
1
November, 2018
Available data
3
bam
3
bigWig
2
bed narrowPeak
2
bigBed narrowPeak
1
bed bed3+
1
bed bedMethyl
1
bed broadPeak
1
bigBed bedMethyl
1
bigBed broadPeak
1
fastq
Organism
3
Homo sapiens
Biosample type
205
tissue
78
primary cell
3
cell line
1
in vitro differentiated cells
Organ
1
epithelium
1
kidney
1
liver
1
pancreas
Project
3
AMP
Genome assembly (visualization)
3
GRCh38
2
hg19
Lab
3
AMP-T2D consortium
target.investigated_as!
other context
recombinant protein
BIOSAMPLE
ASSAY
3 results
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DNase-seq
WGBS
cell line
HepG2
1
Panc1
1
glomerular visceral epithelial cell
1
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