Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
279
ChIP-seq
247
total RNA-seq
193
ATAC-seq
187
single cell RNA-seq
56
snATAC-seq
47
WGBS
31
DNase-seq
17
pCHi-C
10
Hi-C
10
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
47
DNA methylation
31
DNA accessibility
Date released
41
May, 2022
24
June, 2019
6
February, 2021
4
October, 2019
2
August, 2017
1
November, 2020
Available data
41
zippedFastqFolder
29
bam
29
bed narrowPeak
29
bigBed narrowPeak
29
bigWig
28
bed broadPeak
28
bigBed broadPeak
27
bed bed3+
7
fastq
6
tsv
Organism
78
Homo sapiens
Biosample type
205
tissue
78
primary cell
3
cell line
1
in vitro differentiated cells
Organ
65
epithelium
47
pancreas
12
kidney
6
connective tissue
6
vasculature
5
brain
4
blood vessel
3
heart
2
liver
2
vein
1
eye
1
musculature of body
Project
47
HPAP
31
AMP
Genome assembly (visualization)
27
GRCh38
22
hg19
Lab
47
Klaus Kaestner, Upenn
31
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
month_released!
August, 2020
BIOSAMPLE
ASSAY
78 results
search-icon
table-tab-icon
Clear Filters
WGBS
DNase-seq
primary cell
pancreatic alpha cell
31
pancreatic beta cell
16
cardiac fibroblast
3
kidney tubule cell
3
endothelial cell of umbilical vein
2
+ See 20 more…
See all biosamples
Download