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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1672
ChIP-seq
1051
total RNA-seq
501
ATAC-seq
365
single cell RNA-seq
86
RNA microarray
83
snATAC-seq
69
WGBS
51
pCHi-C
29
Hi-C
20
RRBS
15
small RNA-seq
10
MeRIP-seq
7
DNase-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
69
DNA methylation
7
DNA accessibility
Date released
41
May, 2022
12
July, 2019
7
August, 2017
7
November, 2018
6
February, 2021
3
October, 2019
Available data
216
bam
215
bigWig
200
bed narrowPeak
200
bigBed narrowPeak
197
bed broadPeak
197
bigBed broadPeak
bed bed3+
41
zippedFastqFolder
24
fastq
15
bed bedMethyl
15
bigBed bedMethyl
6
tsv
Organism
76
Homo sapiens
Biosample type
51
primary cell
23
tissue
2
cell line
Organ
52
pancreas
50
epithelium
8
heart
connective tissue
6
adipose tissue
6
liver
3
kidney
2
blood vessel
2
spleen
2
vasculature
1
limb
1
musculature of body
Project
47
HPAP
29
AMP
Genome assembly (visualization)
17
GRCh38
4
hg19
Lab
47
Klaus Kaestner, Upenn
29
AMP-T2D consortium
files.file_type!
bed bed3+
month_released!
September, 2017
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
76 results
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WGBS
DNase-seq
primary cell
pancreatic alpha cell
31
pancreatic beta cell
16
skeletal muscle myoblast
2
kidney glomerular epithelial cell
1
kidney tubule cell
1
tissue
heart left ventricle
4
liver
3
aorta
2
body of pancreas
2
heart right ventricle
2
+ See 7 more…
cell line
HepG2
1
glomerular visceral epithelial cell
1
See all biosamples
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