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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1525
total RNA-seq
1041
ChIP-seq
504
ATAC-seq
369
single cell RNA-seq
87
RNA microarray
84
snATAC-seq
75
WGBS
57
pCHi-C
29
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
DNase-seq
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
75
DNA methylation
3
DNA accessibility
Date released
41
May, 2022
12
July, 2019
10
August, 2017
7
November, 2018
6
February, 2021
2
October, 2019
Available data
227
bam
226
bigWig
209
bed narrowPeak
bigBed narrowPeak
206
bed broadPeak
206
bigBed broadPeak
204
bed bed3+
41
zippedFastqFolder
29
fastq
17
bed bedMethyl
17
bigBed bedMethyl
6
tsv
Organism
78
Homo sapiens
Biosample type
49
primary cell
28
tissue
1
cell line
Organ
51
pancreas
49
epithelium
8
heart
6
adipose tissue
6
connective tissue
6
liver
2
blood vessel
2
kidney
2
spleen
2
vasculature
1
limb
1
musculature of body
Project
47
HPAP
31
AMP
Genome assembly (visualization)
17
GRCh38
Lab
47
Klaus Kaestner, Upenn
31
AMP-T2D consortium
files.file_type!
bigBed narrowPeak
hdf5
month_released!
October, 2018
BIOSAMPLE
ASSAY
78 results
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WGBS
DNase-seq
primary cell
pancreatic alpha cell
31
pancreatic beta cell
16
kidney glomerular epithelial cell
1
kidney tubule cell
1
tissue
heart left ventricle
4
adipose tissue
3
liver
3
subcutaneous abdominal adipose tissue
3
aorta
2
+ See 8 more…
cell line
HepG2
1
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