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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1598
ChIP-seq
1497
total RNA-seq
509
ATAC-seq
361
single cell RNA-seq
87
RNA microarray
84
snATAC-seq
75
WGBS
53
pCHi-C
29
Hi-C
21
RRBS
18
small RNA-seq
15
DNase-seq
10
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
75
DNA methylation
15
DNA accessibility
Date released
June, 2019
41
May, 2022
16
November, 2018
14
August, 2017
12
July, 2019
October, 2019
6
February, 2021
1
November, 2020
Available data
41
zippedFastqFolder
32
bam
31
bigWig
29
fastq
17
bed bedMethyl
17
bigBed bedMethyl
14
bed narrowPeak
14
bigBed narrowPeak
12
bed broadPeak
12
bigBed broadPeak
10
bed bed3+
6
tsv
Organism
90
Homo sapiens
Biosample type
50
primary cell
38
tissue
1
cell line
1
in vitro differentiated cells
Organ
54
pancreas
47
epithelium
9
connective tissue
9
liver
8
heart
7
adipose tissue
3
spleen
2
blood vessel
2
brain
2
vasculature
1
limb
1
musculature of body
Project
47
HPAP
43
AMP
Genome assembly (visualization)
29
GRCh38
14
hg19
Lab
47
Klaus Kaestner, Upenn
43
AMP-T2D consortium
files.file_type!
csv
month_released!
June, 2019
October, 2019
BIOSAMPLE
ASSAY
90 results
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WGBS
DNase-seq
primary cell
pancreatic alpha cell
31
pancreatic beta cell
16
skeletal muscle myoblast
2
osteoblast
1
tissue
liver
3
2
body of pancreas
2
2
heart left ventricle
4
adipose tissue
3
right lobe of liver
1
2
+ See 11 more…
cell line
HepG2
1
in vitro differentiated cells
adipocyte
1
See all biosamples
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