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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1806
ChIP-seq
1527
total RNA-seq
524
ATAC-seq
369
single cell RNA-seq
87
RNA microarray
84
snATAC-seq
75
WGBS
57
pCHi-C
33
Hi-C
25
DNase-seq
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
75
DNA methylation
25
DNA accessibility
Date released
June, 2019
41
May, 2022
16
November, 2018
14
August, 2017
12
July, 2019
10
October, 2019
6
February, 2021
1
November, 2020
Available data
41
zippedFastqFolder
40
bam
39
bigWig
29
fastq
22
bed narrowPeak
22
bigBed narrowPeak
19
bed broadPeak
19
bigBed broadPeak
17
bed bed3+
17
bed bedMethyl
17
bigBed bedMethyl
6
tsv
Organism
100
Homo sapiens
Biosample type
54
primary cell
42
tissue
3
cell line
1
in vitro differentiated cells
Organ
55
pancreas
52
epithelium
9
connective tissue
9
liver
8
heart
7
adipose tissue
6
blood vessel
6
vasculature
5
limb
3
kidney
3
spleen
2
artery
2
brain
2
nerve
2
vein
1
musculature of body
Project
53
AMP
47
HPAP
Genome assembly (visualization)
37
GRCh38
22
hg19
Lab
53
AMP-T2D consortium
47
Klaus Kaestner, Upenn
month_released!
August, 2020
December, 2018
June, 2019
BIOSAMPLE
ASSAY
100 results
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WGBS
DNase-seq
primary cell
pancreatic alpha cell
31
pancreatic beta cell
16
endothelial cell of umbilical vein
2
skeletal muscle myoblast
2
kidney glomerular epithelial cell
1
+ See 2 more…
tissue
liver
3
2
body of pancreas
2
2
heart left ventricle
4
adipose tissue
3
right lobe of liver
1
2
+ See 13 more…
cell line
HepG2
1
Panc1
1
glomerular visceral epithelial cell
1
in vitro differentiated cells
adipocyte
1
See all biosamples
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