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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1031
total RNA-seq
907
ChIP-seq
260
ATAC-seq
180
single cell RNA-seq
178
DNase-seq
87
RNA microarray
28
snATAC-seq
27
WGBS
25
pCHi-C
16
Hi-C
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
180
Transcription
178
DNA accessibility
Date released
163
June, 2019
106
August, 2021
47
September, 2023
20
March, 2020
9
April, 2020
9
November, 2018
8
October, 2019
6
April, 2018
6
February, 2021
3
May, 2023
2
August, 2017
1
December, 2019
1
February, 2023
1
May, 2021
1
May, 2022
Available data
183
bam
183
bigWig
177
bed narrowPeak
177
bigBed narrowPeak
176
bed bed3+
176
bed broadPeak
176
bigBed broadPeak
129
tsv
16
fastq
13
txt
6
csv
Organism
383
Homo sapiens
Biosample type
383
tissue
235
primary cell
8
cell line
8
in vitro differentiated cells
4
stem cell
Organ
132
kidney
123
heart
36
limb
34
musculature of body
29
brain
18
ureter
14
pancreas
12
blood vessel
12
vasculature
10
lung
7
eye
6
artery
6
liver
3
adipose tissue
3
connective tissue
2
intestine
2
nerve
2
spleen
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
ovary
1
small intestine
1
stomach
1
urinary bladder
Project
326
AMP
47
KPMP
9
LungMap
1
T1D
Genome assembly (visualization)
183
GRCh38
167
hg19
Lab
315
AMP-T2D consortium
47
KPMP
11
Katalin Susztak, Upenn
9
Xin Sun, UCSD
1
Kyle Gaulton, UCSD
Audit category:
5
audit script error
3
inconsistent ontology term
assay_title!
small RNA-seq
BIOSAMPLE
ASSAY
383 results
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single cell RNA-seq
DNase-seq
pCHi-C
tissue
kidney
64
13
heart left ventricle
18
3
1
heart
1
18
heart right ventricle
17
1
1
left cardiac atrium
18
1
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