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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1321
total RNA-seq
1101
ChIP-seq
504
ATAC-seq
365
single cell RNA-seq
174
DNase-seq
87
RNA microarray
84
snATAC-seq
70
WGBS
52
pCHi-C
27
Hi-C
17
RRBS
11
small RNA-seq
10
MeRIP-seq
5
GRO-seq
4
Capture-C
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
STARR-seq
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
174
DNA accessibility
11
Transcription
Date released
155
June, 2019
29
March, 2020
17
May, 2021
14
October, 2019
11
July, 2019
4
August, 2017
4
November, 2018
1
August, 2018
1
February, 2021
1
November, 2020
Available data
184
bam
183
bigWig
172
bed narrowPeak
172
bigBed narrowPeak
169
bed broadPeak
169
bigBed broadPeak
168
bed bed3+
38
tsv
8
fastq
3
bedpe bed3+
2
ibed
Organism
237
Homo sapiens
Biosample type
178
tissue
43
primary cell
6
cell line
6
in vitro differentiated cells
4
stem cell
Organ
84
kidney
brain
36
limb
36
musculature of body
34
heart
19
epithelium
18
ureter
17
connective tissue
liver
12
vasculature
11
pancreas
10
blood vessel
8
eye
7
adipose tissue
4
artery
2
intestine
2
nerve
2
spleen
2
thymus
2
vein
1
adrenal gland
1
bone element
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
small intestine
1
stomach
1
urinary bladder
Project
220
AMP
17
T1D
Genome assembly (visualization)
181
GRCh38
173
hg19
Lab
220
AMP-T2D consortium
17
Kyle Gaulton, UCSD
Audit category:
13
inconsistent ontology term
organ_slims!
brain
liver
BIOSAMPLE
ASSAY
237 results
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DNase-seq
pCHi-C
small RNA-seq
tissue
heart
18
1
muscle of arm
17
kidney
13
muscle of leg
13
renal cortex interstitium
11
+ See 42 more…
primary cell
cardiac fibroblast
3
kidney tubule cell
3
CD4-positive, alpha-beta T cell
2
endothelial cell of umbilical vein
2
glomerular visceral epithelial cell
2
+ See 28 more…
cell line
MCF-7
1
Panc1
1
RCC 7860 VHL
1
RCC 7860 vector
1
fibroblast cell line
1
+ See 1 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
adipocyte
1
embryonic stem cell
1
lymphocyte of B lineage (iPSC)
1
white fat cell
1
stem cell
mesenchymal stem cell
1
mesendoderm
1
neural progenitor cell (neural stem cell)
1
trophoblast
1
See all biosamples
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