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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1277
total RNA-seq
1186
ChIP-seq
460
ATAC-seq
367
single cell RNA-seq
209
DNase-seq
87
RNA microarray
84
snATAC-seq
74
WGBS
42
pCHi-C
26
Hi-C
21
RRBS
18
small RNA-seq
5
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
1
DNAme array
Assay category
209
DNA accessibility
Date released
187
June, 2019
20
March, 2020
17
May, 2021
12
October, 2019
9
November, 2018
4
August, 2017
1
February, 2021
1
November, 2020
Available data
207
bam
206
bed narrowPeak
206
bigBed narrowPeak
206
bigWig
204
bed bed3+
204
bed broadPeak
204
bigBed broadPeak
20
tsv
11
fastq
Organism
251
Homo sapiens
Biosample type
203
tissue
48
primary cell
8
cell line
6
in vitro differentiated cells
4
stem cell
Organ
80
kidney
36
limb
34
brain
34
musculature of body
33
heart
18
epithelium
18
ureter
12
vasculature
11
connective tissue
10
blood vessel
8
eye
8
pancreas
7
liver
4
artery
3
adipose tissue
2
intestine
2
nerve
2
spleen
2
thymus
2
vein
1
adrenal gland
1
bone element
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
lung
1
ovary
1
small intestine
1
stomach
1
urinary bladder
Project
234
AMP
17
T1D
Genome assembly (visualization)
204
GRCh38
184
hg19
Lab
234
AMP-T2D consortium
17
Kyle Gaulton, UCSD
Audit category:
7
inconsistent ontology term
organ_slims!
spinal cord
BIOSAMPLE
ASSAY
251 results
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DNase-seq
pCHi-C
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 54 more…
primary cell
cardiac fibroblast
3
kidney tubule cell
3
CD4-positive, alpha-beta T cell
2
endothelial cell of umbilical vein
2
glomerular visceral epithelial cell
2
+ See 33 more…
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