Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
397
total RNA-seq
218
ChIP-seq
150
ATAC-seq
80
single cell RNA-seq
51
WGBS
11
snATAC-seq
10
MeRIP-seq
9
Hi-C
8
DNase-seq
2
Capture-C
2
FAIRE-seq
2
RRBS
2
small RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
pCHi-C
Assay category
8
DNA accessibility
Date released
4
June, 2019
2
November, 2018
1
August, 2017
1
March, 2020
1
October, 2019
Available data
8
bam
8
bed narrowPeak
8
bigBed narrowPeak
8
bigWig
7
bed bed3+
7
bed broadPeak
7
bigBed broadPeak
3
fastq
1
tsv
Organism
9
Homo sapiens
Biosample type
8
tissue
1
cell line
Organ
83
kidney
limb
34
brain
34
musculature of body
33
heart
19
epithelium
18
ureter
14
connective tissue
12
vasculature
10
blood vessel
9
liver
9
pancreas
8
eye
4
adipose tissue
4
artery
2
intestine
2
nerve
2
spleen
2
thymus
2
vein
1
adrenal gland
1
bone element
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
small intestine
1
stomach
1
urinary bladder
Project
9
AMP
Genome assembly (visualization)
8
GRCh38
6
hg19
Lab
9
AMP-T2D consortium
lab.title!
Mark McCarthy, Oxford
organ_slims!
limb
BIOSAMPLE
ASSAY
9 results
search-icon
table-tab-icon
Clear Filters
DNase-seq
pCHi-C
tissue
body of pancreas
4
pancreas
2
1
islet of Langerhans
1
cell line
Panc1
1
Download