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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1451
ChIP-seq
1130
total RNA-seq
377
ATAC-seq
289
single cell RNA-seq
200
DNase-seq
87
RNA microarray
73
snATAC-seq
56
pCHi-C
21
Hi-C
16
small RNA-seq
15
WGBS
13
RRBS
5
GRO-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
FAIRE-seq
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
200
DNA accessibility
1
Transcription
Date released
183
June, 2019
9
October, 2019
7
November, 2018
August, 2017
1
March, 2023
1
November, 2020
Available data
198
bam
198
bed narrowPeak
198
bigBed narrowPeak
198
bigWig
197
bed bed3+
197
bed broadPeak
197
bigBed broadPeak
7
fastq
Organism
200
Homo sapiens
Biosample type
170
tissue
29
primary cell
2
cell line
Organ
81
kidney
36
limb
33
musculature of body
32
brain
30
heart
19
epithelium
18
ureter
11
vasculature
9
blood vessel
8
connective tissue
pancreas
5
liver
4
artery
4
eye
2
adipose tissue
2
nerve
2
vein
1
spleen
Project
200
AMP
1
community
Genome assembly (visualization)
198
GRCh38
177
hg19
Lab
200
AMP-T2D consortium
1
Anna Gloyn, Oxford
Audit category:
4
inconsistent ontology term
files.file_type!
hdf5
month_released!
August, 2017
organ_slims!
pancreas
BIOSAMPLE
ASSAY
201 results
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DNase-seq
siRNA RNA-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 37 more…
primary cell
cardiac fibroblast
3
kidney tubule cell
3
endothelial cell of umbilical vein
2
glomerular visceral epithelial cell
2
kidney glomerular epithelial cell
2
+ See 17 more…
cell line
EndoC-BH1
1
glomerular visceral epithelial cell
1
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