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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1592
ChIP-seq
1280
total RNA-seq
331
ATAC-seq
181
DNase-seq
175
single cell RNA-seq
85
RNA microarray
40
pCHi-C
28
WGBS
26
snATAC-seq
24
Hi-C
16
small RNA-seq
11
RRBS
10
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
181
DNA accessibility
175
Transcription
Date released
163
June, 2019
106
August, 2021
47
September, 2023
9
April, 2020
9
November, 2018
6
April, 2018
6
October, 2019
3
August, 2017
3
May, 2023
1
December, 2019
1
February, 2021
1
February, 2023
1
May, 2022
Available data
186
bam
186
bigWig
180
bed narrowPeak
180
bigBed narrowPeak
178
bed broadPeak
178
bigBed broadPeak
177
bed bed3+
104
tsv
17
fastq
8
txt
1
csv
Organism
356
Homo sapiens
Biosample type
353
tissue
primary cell
2
cell line
1
in vitro differentiated cells
Organ
128
kidney
120
heart
36
limb
33
musculature of body
27
brain
18
ureter
14
pancreas
11
blood vessel
11
vasculature
9
lung
6
artery
5
liver
3
connective tissue
3
eye
2
adipose tissue
2
nerve
1
epithelium
1
spleen
Project
300
AMP
47
KPMP
9
LungMap
Genome assembly (visualization)
186
GRCh38
170
hg19
Lab
289
AMP-T2D consortium
47
KPMP
11
Katalin Susztak, Upenn
9
Xin Sun, UCSD
Audit category:
audit script error
3
inconsistent ontology term
audit.ERROR.category!
audit script error
biosample_type!
primary cell
lab.title!
Klaus Kaestner, Upenn
BIOSAMPLE
ASSAY
356 results
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DNase-seq
single cell RNA-seq
tissue
kidney
13
59
heart left ventricle
3
18
heart
18
1
left cardiac atrium
1
18
heart right ventricle
1
17
+ See 52 more…
cell line
Panc1
1
glomerular visceral epithelial cell
1
in vitro differentiated cells
adipocyte
1
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