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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
130
total RNA-seq
84
RNA microarray
59
ChIP-seq
42
ATAC-seq
9
pCHi-C
9
single cell RNA-seq
6
MeRIP-seq
5
Hi-C
4
DNase-seq
2
Capture-C
1
STARR-seq
Assay category
9
Transcription
4
DNA accessibility
Date released
6
July, 2018
4
June, 2019
2
December, 2019
1
June, 2018
Available data
11
bam
11
bigWig
9
tsv
7
fastq
4
bed bed3+
4
bed broadPeak
4
bed narrowPeak
4
bigBed broadPeak
4
bigBed narrowPeak
Organism
13
Homo sapiens
Biosample type
10
primary cell
2
in vitro differentiated cells
1
tissue
Organ
5
pancreas
2
epithelium
1
connective tissue
1
heart
1
kidney
1
limb
1
musculature of body
1
vasculature
Project
13
AMP
Genome assembly (visualization)
11
GRCh38
11
hg19
Lab
13
AMP-T2D consortium
Audit category:
13
inconsistent ontology term
7
audit script error
month_released!
July, 2019
organ_slims!
spinal cord
BIOSAMPLE
ASSAY
13 results
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single cell RNA-seq
DNase-seq
primary cell
co-expressing pancreatic endocrine cell
2
unclassified exocrine cell
2
unclassified pancreatic endocrine cell
2
cardiac fibroblast
1
epithelial cell of proximal tubule
1
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in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
tissue
muscle of leg
1
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