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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1451
ChIP-seq
816
total RNA-seq
308
ATAC-seq
182
single cell RNA-seq
178
DNase-seq
86
RNA microarray
37
pCHi-C
28
snATAC-seq
24
Hi-C
22
WGBS
14
small RNA-seq
11
RRBS
10
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
182
Transcription
178
DNA accessibility
Date released
162
June, 2019
106
August, 2021
47
September, 2023
9
April, 2020
8
November, 2018
6
April, 2018
6
February, 2021
6
October, 2019
3
December, 2019
3
May, 2023
2
August, 2017
1
February, 2023
1
May, 2022
Available data
183
bam
183
bigWig
177
bed narrowPeak
177
bigBed narrowPeak
175
bed bed3+
175
bed broadPeak
175
bigBed broadPeak
111
tsv
15
fastq
13
txt
6
csv
Organism
360
Homo sapiens
Biosample type
356
tissue
primary cell
2
cell line
2
in vitro differentiated cells
Organ
133
kidney
120
heart
36
limb
33
musculature of body
27
brain
18
ureter
14
pancreas
11
blood vessel
11
vasculature
9
lung
6
artery
5
liver
connective tissue
3
eye
2
adipose tissue
2
nerve
1
epithelium
1
spleen
Project
304
AMP
47
KPMP
9
LungMap
Genome assembly (visualization)
183
GRCh38
167
hg19
Lab
293
AMP-T2D consortium
47
KPMP
11
Katalin Susztak, Upenn
9
Xin Sun, UCSD
Audit category:
7
audit script error
3
inconsistent ontology term
biosample_type!
primary cell
lab.title!
Klaus Kaestner, Upenn
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
360 results
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single cell RNA-seq
DNase-seq
tissue
kidney
64
13
heart left ventricle
18
3
heart
1
18
left cardiac atrium
18
1
heart right ventricle
17
1
+ See 51 more…
cell line
Panc1
1
glomerular visceral epithelial cell
1
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
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