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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1009
total RNA-seq
712
ChIP-seq
244
ATAC-seq
174
DNase-seq
171
single cell RNA-seq
87
RNA microarray
27
WGBS
21
pCHi-C
18
snATAC-seq
16
small RNA-seq
15
Hi-C
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
174
DNA accessibility
171
Transcription
Date released
163
June, 2019
106
August, 2021
47
September, 2023
9
November, 2018
6
April, 2018
6
February, 2021
October, 2019
3
May, 2023
2
August, 2017
1
December, 2019
1
February, 2023
1
May, 2022
Available data
179
bam
179
bigWig
173
bed narrowPeak
173
bigBed narrowPeak
172
bed bed3+
172
bed broadPeak
172
bigBed broadPeak
109
tsv
16
fastq
13
txt
6
csv
Organism
345
Homo sapiens
Biosample type
345
tissue
214
primary cell
3
in vitro differentiated cells
Organ
132
kidney
120
heart
33
musculature of body
32
limb
27
brain
18
ureter
13
pancreas
9
blood vessel
9
vasculature
5
liver
4
artery
3
eye
2
adipose tissue
2
connective tissue
1
spleen
Project
298
AMP
47
KPMP
Genome assembly (visualization)
179
GRCh38
163
hg19
Lab
287
AMP-T2D consortium
47
KPMP
11
Katalin Susztak, Upenn
Xin Sun, UCSD
Audit category:
5
audit script error
1
inconsistent ontology term
lab.title!
Xin Sun, UCSD
month_released!
October, 2019
BIOSAMPLE
ASSAY
345 results
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DNase-seq
single cell RNA-seq
tissue
kidney
13
64
heart left ventricle
3
18
heart
18
1
left cardiac atrium
1
18
heart right ventricle
1
17
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