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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1351
ChIP-seq
1267
total RNA-seq
136
ATAC-seq
130
DNase-seq
106
single cell RNA-seq
17
WGBS
17
small RNA-seq
5
GRO-seq
5
Hi-C
4
FAIRE-seq
Assay category
130
DNA accessibility
106
Transcription
Target of assay
3
control
Date released
109
June, 2019
49
April, 2018
48
July, 2018
9
November, 2018
7
October, 2019
4
August, 2017
3
August, 2018
3
July, 2019
3
June, 2018
1
November, 2020
Available data
236
bam
236
bigWig
206
tsv
146
fastq
130
bed narrowPeak
130
bigBed narrowPeak
128
bed broadPeak
128
bigBed broadPeak
126
bed bed3+
52
zippedFastqFolder
3
csv
Organism
236
Homo sapiens
Biosample type
119
primary cell
115
tissue
1
cell line
1
in vitro differentiated cells
Organ
88
pancreas
87
epithelium
kidney
36
limb
35
brain
33
musculature of body
30
heart
18
ureter
13
connective tissue
11
vasculature
9
blood vessel
5
liver
4
artery
4
eye
2
adipose tissue
2
nerve
2
vein
1
spleen
Project
236
AMP
Genome assembly (visualization)
234
GRCh38
220
hg19
Lab
236
AMP-T2D consortium
Audit category:
10
inconsistent ontology term
organ_slims!
kidney
BIOSAMPLE
ASSAY
236 results
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DNase-seq
single cell RNA-seq
primary cell
pancreatic acinar cell
12
pancreatic alpha cell
12
pancreatic beta cell
12
pancreatic delta cell
11
pancreatic ductal cell
10
+ See 28 more…
tissue
heart
18
muscle of arm
17
brain
14
muscle of leg
13
islet of Langerhans
1
6
+ See 31 more…
cell line
Panc1
1
in vitro differentiated cells
adipocyte
1
See all biosamples
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