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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
857
ChIP-seq
237
total RNA-seq
131
single cell RNA-seq
61
ATAC-seq
27
snATAC-seq
17
WGBS
12
DNase-seq
5
GRO-seq
4
RRBS
2
FAIRE-seq
1
Hi-C
Assay category
131
Transcription
12
DNA accessibility
Date released
48
July, 2018
44
April, 2018
22
September, 2020
12
February, 2021
10
November, 2018
3
August, 2017
August, 2018
3
June, 2018
1
September, 2018
Available data
312
bam
312
bigWig
209
bed narrowPeak
209
bigBed narrowPeak
208
tsv
206
bed broadPeak
206
bigBed broadPeak
204
bed bed3+
143
fastq
52
zippedFastqFolder
13
txt
8
csv
Organism
143
Homo sapiens
Biosample type
126
primary cell
16
tissue
1
in vitro differentiated cells
Organ
75
pancreas
63
epithelium
5
connective tissue
3
liver
2
brain
1
adipose tissue
1
spleen
Project
109
AMP
34
HPAP
Genome assembly (visualization)
107
hg19
106
GRCh38
Lab
109
AMP-T2D consortium
34
Klaus Kaestner, Upenn
Audit category:
7
inconsistent ontology term
month_released!
August, 2018
BIOSAMPLE
ASSAY
143 results
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single cell RNA-seq
DNase-seq
primary cell
Langerhans cell
34
pancreatic beta cell
12
pancreatic delta cell
11
pancreatic alpha cell
10
pancreatic cell
9
+ See 13 more…
tissue
islet of Langerhans
6
1
body of pancreas
2
brain
2
liver
2
omental fat pad
1
+ See 2 more…
in vitro differentiated cells
adipocyte
1
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