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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1656
ChIP-seq
1391
total RNA-seq
489
ATAC-seq
367
single cell RNA-seq
209
DNase-seq
87
RNA microarray
84
snATAC-seq
75
WGBS
50
pCHi-C
28
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
STARR-seq
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
GRO-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
209
DNA accessibility
18
Transcription
Date released
187
June, 2019
18
July, 2019
9
November, 2018
8
October, 2019
4
August, 2017
1
November, 2020
Available data
224
bam
224
bigWig
206
bed narrowPeak
206
bigBed narrowPeak
203
bed broadPeak
203
bigBed broadPeak
202
bed bed3+
18
tsv
11
fastq
Organism
227
Homo sapiens
Biosample type
194
tissue
31
primary cell
2
cell line
in vitro differentiated cells
Organ
82
kidney
36
brain
36
limb
35
musculature of body
31
heart
19
epithelium
18
ureter
11
connective tissue
11
vasculature
10
pancreas
9
blood vessel
9
liver
5
adipose tissue
4
artery
4
eye
2
nerve
vein
1
spleen
Project
227
AMP
Genome assembly (visualization)
222
GRCh38
201
hg19
Lab
227
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
biosample_type!
in vitro differentiated cells
organ_slims!
thymus
vein
BIOSAMPLE
ASSAY
227 results
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DNase-seq
small RNA-seq
tissue
heart
18
1
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 46 more…
primary cell
cardiac fibroblast
3
kidney tubule cell
3
glomerular visceral epithelial cell
2
kidney glomerular epithelial cell
2
skeletal muscle myoblast
2
+ See 19 more…
cell line
Panc1
1
glomerular visceral epithelial cell
1
See all biosamples
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