Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1031
total RNA-seq
907
ChIP-seq
260
ATAC-seq
180
single cell RNA-seq
178
DNase-seq
87
RNA microarray
28
snATAC-seq
25
pCHi-C
16
Hi-C
16
small RNA-seq
11
WGBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
2
RRBS
Assay category
206
DNA accessibility
Date released
163
June, 2019
10
April, 2020
9
November, 2018
8
January, 2021
6
August, 2021
4
October, 2019
2
August, 2017
2
February, 2023
1
August, 2022
1
May, 2022
Available data
177
bam
177
bed bed3+
177
bed narrowPeak
177
bigBed narrowPeak
177
bigWig
176
bed broadPeak
176
bigBed broadPeak
10
fastq
1
txt
Organism
205
Homo sapiens
Biosample type
206
tissue
87
primary cell
2
cell line
1
in vitro differentiated cells
Organ
74
kidney
36
limb
33
musculature of body
27
brain
27
heart
18
pancreas
18
ureter
10
lung
5
blood vessel
5
vasculature
4
artery
4
liver
3
eye
2
adipose tissue
2
connective tissue
2
nerve
1
spleen
Project
186
AMP
10
LungMap
10
T1D
Genome assembly (visualization)
177
GRCh38
162
hg19
Lab
180
AMP-T2D consortium
10
Kyle Gaulton, UCSD
10
Xin Sun, UCSD
6
Katalin Susztak, Upenn
Audit category:
2
audit script error
1
inconsistent ontology term
files.file_type!
bed bedMethyl
BIOSAMPLE
ASSAY
206 results
search-icon
table-tab-icon
Clear Filters
DNase-seq
snATAC-seq
tissue
kidney
13
6
heart
18
muscle of arm
17
brain
14
muscle of leg
13
+ See 42 more…
See all biosamples
Download