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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1770
ChIP-seq
1527
total RNA-seq
531
ATAC-seq
369
single cell RNA-seq
86
RNA microarray
83
snATAC-seq
75
WGBS
57
pCHi-C
32
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
6
DNase-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
DNAme array
1
whole genome sequencing assay
Assay category
89
DNA accessibility
Date released
27
February, 2021
22
May, 2022
16
January, 2021
9
April, 2020
6
August, 2021
3
August, 2017
3
October, 2019
2
February, 2023
1
August, 2022
Available data
207
bam
207
bed narrowPeak
207
bigBed narrowPeak
207
bigWig
204
bed broadPeak
bigBed broadPeak
203
bed bed3+
39
fastq
21
zippedFastqFolder
1
txt
Organism
89
Homo sapiens
Biosample type
59
primary cell
29
tissue
1
cell line
Organ
12
pancreas
9
kidney
9
lung
8
blood
8
bodily fluid
3
epithelium
1
liver
1
musculature of body
Project
48
HPAP
18
T1D
14
AMP
9
LungMap
Genome assembly (visualization)
4
hg19
2
GRCh38
Lab
48
Klaus Kaestner, Upenn
18
Kyle Gaulton, UCSD
9
Xin Sun, UCSD
8
AMP-T2D consortium
6
Katalin Susztak, Upenn
Audit category:
29
audit script error
files.file_type!
bigBed broadPeak
organ_slims!
vein
BIOSAMPLE
ASSAY
89 results
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snATAC-seq
DNase-seq
primary cell
Langerhans cell
48
peripheral blood mononuclear cell
8
kidney glomerular epithelial cell
1
kidney tubule cell
1
skeletal muscle myoblast
1
tissue
lung
9
islet of Langerhans
7
1
kidney
6
pancreas
4
right lobe of liver
1
+ See 1 more…
cell line
glomerular visceral epithelial cell
1
See all biosamples
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