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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
352
ATAC-seq
313
ChIP-seq
257
single cell RNA-seq
246
total RNA-seq
87
RNA microarray
84
snATAC-seq
57
WGBS
56
pCHi-C
26
Hi-C
20
RRBS
10
MeRIP-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
DNase-seq
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
3
DNA accessibility
Date released
3
February, 2021
2
October, 2019
1
August, 2017
Available data
198
bam
198
bed narrowPeak
198
bigBed narrowPeak
bigWig
195
bed broadPeak
195
bigBed broadPeak
193
bed bed3+
12
fastq
3
tsv
Organism
6
Homo sapiens
Biosample type
4
tissue
2
primary cell
Organ
5
kidney
2
epithelium
1
liver
Project
6
AMP
Lab
6
AMP-T2D consortium
files.file_type!
bigWig
organ_slims!
vasculature
target.investigated_as!
histone
BIOSAMPLE
ASSAY
6 results
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Clear Filters
DNase-seq
snDrop-seq
tissue
kidney (Cortex-Medulla)
1
kidney (cortex)
1
kidney (medulla)
1
right lobe of liver
1
primary cell
kidney glomerular epithelial cell
1
kidney tubule cell
1
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