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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
484
ChIP-seq
113
total RNA-seq
28
ATAC-seq
6
MeRIP-seq
6
pCHi-C
5
STARR-seq
4
Hi-C
2
Capture-C
2
DNase-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
MPRA
1
WGBS
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
113
Transcription
2
DNA accessibility
Date released
78
February, 2021
17
August, 2021
6
October, 2019
5
January, 2019
4
March, 2020
4
May, 2021
1
November, 2019
Available data
113
tsv
106
bam
106
bigWig
5
fastq
2
bed narrowPeak
2
bigBed narrowPeak
1
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
Organism
115
Homo sapiens
Biosample type
1197
tissue
180
primary cell
132
in vitro differentiated cells
115
cell line
Organ
52
artery
52
blood vessel
52
heart
52
vasculature
35
epithelium
34
pancreas
14
liver
8
embryo
5
kidney
Project
113
AMP
2
T1D
Genome assembly (visualization)
106
GRCh38
106
hg19
Lab
106
AMP-T2D consortium
9
Bing Ren, UCSD
Audit category:
36
inconsistent ontology term
lab.title!
Kyle Gaulton, UCSD
month_released!
January, 2018
BIOSAMPLE
ASSAY
115 results
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total RNA-seq
DNase-seq
cell line
smooth muscle cell of the coronary artery
52
EndoC_BH1
33
HepG2
14
H1-hESC
8
early embryonic cell
2
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