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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
478
ChIP-seq
61
total RNA-seq
20
ATAC-seq
6
MeRIP-seq
6
pCHi-C
5
STARR-seq
4
Hi-C
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
DNase-seq
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
MPRA
1
WGBS
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
61
Transcription
2
DNA accessibility
Date released
26
February, 2021
17
August, 2021
6
October, 2019
5
January, 2019
4
March, 2020
4
May, 2021
1
November, 2019
Available data
61
tsv
54
bam
54
bigWig
5
fastq
2
bed narrowPeak
2
bigBed narrowPeak
1
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
Organism
63
Homo sapiens
Biosample type
1167
tissue
271
primary cell
136
in vitro differentiated cells
63
cell line
Organ
52
artery
52
blood vessel
heart
52
vasculature
35
epithelium
34
pancreas
14
liver
8
embryo
5
kidney
Project
61
AMP
2
T1D
Genome assembly (visualization)
54
GRCh38
54
hg19
Lab
54
AMP-T2D consortium
9
Bing Ren, UCSD
Audit category:
36
inconsistent ontology term
month_released!
January, 2018
organ_slims!
heart
BIOSAMPLE
ASSAY
63 results
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total RNA-seq
DNase-seq
cell line
EndoC_BH1
33
HepG2
14
H1-hESC
8
early embryonic cell
2
glomerular visceral epithelial cell
1
1
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