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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1152
total RNA-seq
851
ChIP-seq
219
ATAC-seq
185
DNase-seq
106
single cell RNA-seq
23
Hi-C
19
RRBS
18
small RNA-seq
5
FAIRE-seq
2
pCHi-C
1
snATAC-seq
Assay category
185
DNA accessibility
Date released
164
June, 2019
9
November, 2018
8
October, 2019
3
August, 2017
1
November, 2020
Available data
185
bam
185
bed narrowPeak
185
bigBed narrowPeak
185
bigWig
182
bed broadPeak
182
bigBed broadPeak
181
bed bed3+
11
fastq
Organism
185
Homo sapiens
Biosample type
161
tissue
22
primary cell
2
cell line
in vitro differentiated cells
Organ
72
kidney
36
limb
33
musculature of body
27
heart
22
brain
18
ureter
11
epithelium
10
vasculature
8
blood vessel
7
connective tissue
6
pancreas
5
liver
4
artery
4
eye
2
adipose tissue
2
nerve
2
vein
1
spleen
Project
185
AMP
Genome assembly (visualization)
206
GRCh38
185
hg19
Lab
185
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
biosample_type!
in vitro differentiated cells
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
185 results
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DNase-seq
tissue
muscle of arm
17
heart
16
brain
14
kidney
13
muscle of leg
13
+ See 29 more…
primary cell
cardiac fibroblast
2
endothelial cell of umbilical vein
2
skeletal muscle myoblast
2
astrocyte of the cerebellum
1
astrocyte of the hippocampus
1
+ See 14 more…
cell line
Panc1
1
glomerular visceral epithelial cell
1
See all biosamples
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