Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1353
ChIP-seq
1200
total RNA-seq
479
ATAC-seq
318
single cell RNA-seq
206
DNase-seq
84
snATAC-seq
74
WGBS
44
pCHi-C
26
Hi-C
19
RRBS
18
small RNA-seq
5
FAIRE-seq
5
GRO-seq
4
MeRIP-seq
3
RNA microarray
3
snDrop-seq
2
Capture-C
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
DNAme array
Assay category
206
DNA accessibility
Date released
183
June, 2019
9
November, 2018
8
October, 2019
5
August, 2017
1
November, 2020
Available data
203
bam
203
bed narrowPeak
203
bigBed narrowPeak
203
bigWig
201
bed broadPeak
201
bigBed broadPeak
199
bed bed3+
12
fastq
Organism
206
Homo sapiens
Biosample type
177
tissue
28
primary cell
cell line
1
in vitro differentiated cells
Organ
79
kidney
35
limb
32
brain
32
musculature of body
29
heart
18
ureter
17
epithelium
10
vasculature
9
blood vessel
8
connective tissue
7
pancreas
6
liver
4
artery
4
eye
2
adipose tissue
2
nerve
2
vein
1
spleen
Project
206
AMP
Genome assembly (visualization)
201
GRCh38
180
hg19
Lab
206
AMP-T2D consortium
Audit category:
inconsistent ontology term
audit.ERROR.category!
inconsistent ontology term
biosample_type!
cell line
month_released!
July, 2018
BIOSAMPLE
ASSAY
206 results
search-icon
table-tab-icon
Clear Filters
DNase-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
12
+ See 40 more…
primary cell
kidney tubule cell
3
cardiac fibroblast
2
endothelial cell of umbilical vein
2
glomerular visceral epithelial cell
2
kidney glomerular epithelial cell
2
+ See 16 more…
in vitro differentiated cells
adipocyte
1
See all biosamples
Download