Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1505
total RNA-seq
458
ChIP-seq
363
single cell RNA-seq
249
ATAC-seq
85
RNA microarray
84
snATAC-seq
75
WGBS
55
pCHi-C
31
Hi-C
19
RRBS
14
small RNA-seq
10
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
DNase-seq
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
3
DNA accessibility
Date released
2
October, 2019
1
August, 2017
Available data
177
bam
bed narrowPeak
177
bigBed narrowPeak
177
bigWig
174
bed broadPeak
174
bigBed broadPeak
172
bed bed3+
10
fastq
Organism
3
Homo sapiens
Biosample type
2
primary cell
1
tissue
Organ
2
epithelium
2
kidney
1
liver
Project
3
AMP
Lab
3
AMP-T2D consortium
audit.NOT_COMPLIANT.category!
missing controlled_by
files.file_type!
bed narrowPeak
month_released!
December, 2019
organ_slims!
brain
BIOSAMPLE
ASSAY
3 results
search-icon
table-tab-icon
Clear Filters
DNase-seq
primary cell
kidney glomerular epithelial cell
1
kidney tubule cell
1
tissue
right lobe of liver
1
Download