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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1486
ChIP-seq
1481
total RNA-seq
506
ATAC-seq
366
single cell RNA-seq
170
DNase-seq
87
RNA microarray
84
snATAC-seq
75
WGBS
50
pCHi-C
26
Hi-C
19
RRBS
14
small RNA-seq
10
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
FAIRE-seq
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
170
DNA accessibility
Date released
157
June, 2019
October, 2019
7
November, 2018
5
August, 2017
1
November, 2020
Available data
169
bam
169
bed narrowPeak
169
bigBed narrowPeak
169
bigWig
167
bed broadPeak
167
bigBed broadPeak
165
bed bed3+
10
fastq
Organism
170
Homo sapiens
Biosample type
147
tissue
22
primary cell
1
in vitro differentiated cells
Organ
78
kidney
33
musculature of body
brain
32
limb
30
heart
18
ureter
14
epithelium
9
connective tissue
7
pancreas
7
vasculature
6
liver
5
blood vessel
4
eye
2
adipose tissue
2
artery
1
spleen
Project
170
AMP
Genome assembly (visualization)
167
GRCh38
156
hg19
Lab
170
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
audit.WARNING.category!
inconsistent control run_type
month_released!
October, 2019
organ_slims!
brain
large intestine
BIOSAMPLE
ASSAY
170 results
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Clear Filters
DNase-seq
tissue
heart
18
muscle of arm
17
kidney
13
muscle of leg
13
renal cortex interstitium
11
+ See 25 more…
primary cell
cardiac fibroblast
3
glomerular visceral epithelial cell
2
kidney tubule cell
2
skeletal muscle myoblast
2
cardiac muscle cell
1
+ See 12 more…
in vitro differentiated cells
adipocyte
1
See all biosamples
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