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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1385
ChIP-seq
1272
total RNA-seq
469
ATAC-seq
363
single cell RNA-seq
196
DNase-seq
87
RNA microarray
66
snATAC-seq
64
WGBS
39
pCHi-C
29
Hi-C
18
small RNA-seq
14
RRBS
10
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
FAIRE-seq
3
snDrop-seq
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
196
DNA accessibility
Date released
180
June, 2019
9
November, 2018
6
October, 2019
August, 2017
1
November, 2020
Available data
194
bam
194
bed narrowPeak
194
bigBed narrowPeak
194
bigWig
193
bed bed3+
193
bed broadPeak
193
bigBed broadPeak
9
fastq
Organism
196
Homo sapiens
Biosample type
171
tissue
23
primary cell
2
cell line
Organ
81
kidney
36
limb
33
musculature of body
32
brain
30
heart
19
epithelium
18
ureter
vasculature
9
blood vessel
8
connective tissue
7
pancreas
5
liver
4
artery
4
eye
2
adipose tissue
2
nerve
2
vein
1
spleen
Project
196
AMP
Genome assembly (visualization)
194
GRCh38
172
hg19
Lab
196
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
award.project!
T1D
month_released!
August, 2017
organ_slims!
vasculature
BIOSAMPLE
ASSAY
196 results
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Clear Filters
DNase-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 36 more…
primary cell
cardiac fibroblast
3
kidney tubule cell
3
glomerular visceral epithelial cell
2
kidney glomerular epithelial cell
2
astrocyte of the cerebellum
1
+ See 12 more…
cell line
Panc1
1
glomerular visceral epithelial cell
1
See all biosamples
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