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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1658
ChIP-seq
872
total RNA-seq
390
ATAC-seq
211
single cell RNA-seq
129
DNase-seq
84
RNA microarray
36
pCHi-C
29
Hi-C
22
WGBS
17
RRBS
14
small RNA-seq
10
MeRIP-seq
5
GRO-seq
4
Capture-C
4
FAIRE-seq
3
STARR-seq
2
snATAC-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
DNAme array
1
MPRA
1
whole genome sequencing assay
Assay category
129
DNA accessibility
Date released
108
June, 2019
8
November, 2018
7
October, 2019
5
August, 2017
1
November, 2020
Available data
128
bam
128
bed narrowPeak
128
bigBed narrowPeak
128
bigWig
126
bed broadPeak
126
bigBed broadPeak
124
bed bed3+
11
fastq
Organism
129
Homo sapiens
Biosample type
108
tissue
19
primary cell
1
cell line
1
in vitro differentiated cells
Organ
kidney
36
limb
33
musculature of body
32
brain
30
heart
19
epithelium
18
ureter
11
vasculature
9
blood vessel
9
connective tissue
8
pancreas
6
liver
4
artery
4
eye
adipose tissue
2
nerve
2
vein
1
spleen
Project
129
AMP
Genome assembly (visualization)
126
GRCh38
112
hg19
Lab
129
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
award.project!
LungMap
organ_slims!
adipose tissue
kidney
BIOSAMPLE
ASSAY
129 results
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DNase-seq
tissue
heart
18
muscle of arm
17
brain
14
muscle of leg
13
body of pancreas
4
+ See 30 more…
primary cell
cardiac fibroblast
3
endothelial cell of umbilical vein
2
skeletal muscle myoblast
2
astrocyte of the cerebellum
1
astrocyte of the hippocampus
1
+ See 10 more…
cell line
Panc1
1
in vitro differentiated cells
adipocyte
1
See all biosamples
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