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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1625
ChIP-seq
837
total RNA-seq
418
ATAC-seq
224
single cell RNA-seq
199
DNase-seq
86
RNA microarray
32
pCHi-C
29
Hi-C
15
small RNA-seq
10
MeRIP-seq
8
snATAC-seq
7
WGBS
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
3
snDrop-seq
2
Capture-C
2
RRBS
1
CRISPR genome editing followed by sgRNA sequencing
1
DNAme array
1
MPRA
1
whole genome sequencing assay
Assay category
199
DNA accessibility
Date released
177
June, 2019
10
October, 2019
8
November, 2018
4
August, 2017
Available data
196
bam
196
bed narrowPeak
196
bigBed narrowPeak
196
bigWig
193
bed broadPeak
193
bigBed broadPeak
192
bed bed3+
10
fastq
Organism
199
Homo sapiens
Biosample type
173
tissue
24
primary cell
2
cell line
Organ
81
kidney
36
limb
33
musculature of body
32
brain
30
heart
19
epithelium
18
ureter
11
vasculature
9
blood vessel
connective tissue
8
pancreas
6
liver
4
artery
eye
2
adipose tissue
2
nerve
2
vein
1
spleen
Project
199
AMP
Genome assembly (visualization)
194
GRCh38
174
hg19
Lab
199
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
files.file_type!
bigBed bedMethyl
organ_slims!
connective tissue
eye
BIOSAMPLE
ASSAY
199 results
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DNase-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 38 more…
primary cell
kidney tubule cell
3
endothelial cell of umbilical vein
2
glomerular visceral epithelial cell
2
kidney glomerular epithelial cell
2
skeletal muscle myoblast
2
+ See 13 more…
cell line
Panc1
1
glomerular visceral epithelial cell
1
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